SNP Profiles of EET 45 [ECU] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AA	CG	CT	CT	CC	CT	GG	TT	AA	AG	CC	AA	CT
1._EET_45_[ECU]	CC	AA	CG	CT	CT	CC	CT	GG	TT	AA	AG	CC	AA	CT
2._GC-04-058-4-09	CC	AA	CG	CC	CT	AC	CT	GG	TT	AA	AG	CC	AA	CT
3._GC-04-058-4-09	CC	AA	CG	CC	CT	AC	CT	GG	TT	AA	AG	CC	AA	CT
4._GC-04-057-4-08	CC	AA	CG	CC	CT	AC	CT	GG	TT	AA	AG	CC	AA	CT
5._GC-04-057-4-08	CC	AA	CG	CC	CT	AC	CT	GG	TT	AA	AG	CC	AA	CT
6._GC-04-057-4-08	CC	AA	CG	CC	CT	AC	CT	GG	TT	AA	AG	CC	AA	CT
7._GC-03-017-2-06	CC	AA	CG	CC	CT	AC	CT	GG	TT	AA	AG	CC	AA	CT
8._EET_45_[ECU]	CC	AA	CG	CC	CT	AC	CT	GG	TT	AA	AG	CC	AA	CT
9._EET_45_[ECU]	CC	AA	CG	CC	CT	AC	CT	GG	TT	AA	AG	CC	AA	CT
10._EET_45_[ECU]	CC	AA	CG	CC	CT	AC	CT	GG	TT	AA	AG	CC	AA	CT
11._EET_45_[ECU]	CC	AA	CG	CC	CT	AC	CT	GG	TT	AA	AG	CC	AA	CT
12._EET_45_[ECU]	CC	AA	CG	CC	CT	AC	CT	GG	TT	AA	AG	CC	AA	CT
13._EET_45_[ECU]	CC	AA	CG	CC	CT	AC	CT	GG	TT	AA	AG	CC	AA	CT
14._GC-04-057-4-08	_	AA	CG	CC	CT	AC	CT	GG	TT	AA	AG	CC	AA	CT
15._GC-04-057-4-08	CC	AA	CG	CC	CT	AC	CT	GG	TT	AA	AG	CC	AA	CT
16._EET_45_[ECU]	CC	AA	CG	CC	CT	AC	CT	GG	TT	AA	AG	CC	AA	CT
17._EET_45_[ECU]	_	AA	CG	CC	CT	AC	CT	GG	TT	AA	AG	CC	AA	CT
18._GC-03-017-2-06	CT	AG	CG	CC	CT	CC	CT	GT	CT	AA	AG	CC	AG	CT
19._EET_45_[ECU]	CT	AG	CG	CC	CT	CC	CT	GT	CT	AA	AG	CC	AG	CT
20._EET_45_[ECU]	CT	AG	CG	CT	CT	AC	CT	GT	CT	AT	AG	CT	AG	CT
21._GC-03-017-2-06	CT	AG	CG	CT	CT	AC	CT	GT	CT	AT	AG	CT	AG	CT
22._GC-04-058-4-09	CT	AG	CG	CT	TT	AA	CC	GG	TT	AA	AA	CT	AA	CT
23._EET_45_[ECU]	CT	AG	CG	CT	TT	AA	CC	GG	TT	AA	AA	CT	AA	CT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	CG	CT	CT	CG	GT	AG	TT	AA	CG	GG	CT	AA	GG
1._EET_45_[ECU]	TT	CG	CT	CT	CG	GT	AG	TT	CC	CG	GG	CT	AA	GG
2._GC-04-058-4-09	TT	CG	CT	CT	CG	GT	AA	TT	CC	CG	GG	CT	AA	GG
3._GC-04-058-4-09	TT	CG	CT	CT	CG	GT	AA	TT	CC	CG	GG	CT	AA	GG
4._GC-04-057-4-08	TT	CG	CT	CT	CG	GT	AA	TT	CC	CG	GG	CT	AA	GG
5._GC-04-057-4-08	TT	CG	CT	CT	CG	GT	AA	TT	CC	CG	GG	CT	AA	GG
6._GC-04-057-4-08	TT	CG	CT	CT	CG	GT	AA	TT	CC	CG	GG	CT	AA	GG
7._GC-03-017-2-06	TT	CG	CT	CT	CG	GT	AA	TT	CC	CG	GG	CT	AA	GG
8._EET_45_[ECU]	TT	CG	CT	CT	CG	GT	AA	TT	CC	CG	GG	CT	AA	GG
9._EET_45_[ECU]	TT	CG	CT	CT	CG	GT	AA	TT	CC	CG	GG	CT	AA	GG
10._EET_45_[ECU]	TT	CG	CT	CT	CG	GT	AA	TT	CC	CG	GG	CT	AA	GG
11._EET_45_[ECU]	TT	CG	CT	CT	CG	GT	AA	TT	CC	CG	GG	CT	AA	GG
12._EET_45_[ECU]	TT	CG	CT	CT	CG	GT	AA	TT	CC	CG	GG	CT	AA	GG
13._EET_45_[ECU]	TT	CG	CT	CT	CG	GT	AA	TT	CC	CG	GG	CT	AA	GG
14._GC-04-057-4-08	TT	CG	CT	CT	CG	GT	AA	TT	CC	CG	GG	CT	AA	GG
15._GC-04-057-4-08	TT	CG	CT	CT	CG	GT	AA	TT	CC	CG	GG	CT	AA	GG
16._EET_45_[ECU]	TT	CG	CT	CT	CG	GT	AA	TT	CC	CG	GG	CT	AA	GG
17._EET_45_[ECU]	TT	CG	CT	CT	CG	GT	AA	TT	CC	CG	GG	CT	AA	GG
18._GC-03-017-2-06	AT	CG	CT	CT	CG	GG	AG	TT	AC	CG	GT	CT	AC	AG
19._EET_45_[ECU]	AT	CG	CT	CT	CG	GG	AG	TT	AC	CG	GT	CT	AC	AG
20._EET_45_[ECU]	AT	CG	CT	CT	CG	GG	AG	TT	AC	GG	GT	CT	AC	AG
21._GC-03-017-2-06	AT	CG	CT	CT	CG	GG	AG	TT	AC	GG	GT	CT	AC	AG
22._GC-04-058-4-09	AA	GG	TT	CC	CG	TT	GG	CT	AC	CG	GT	CT	CC	AG
23._EET_45_[ECU]	AA	GG	TT	CC	CG	TT	GG	CT	AC	CG	GT	CT	CC	AG

	29	30	31	32	33	34	35	36	37	38
_Input profile	AA	CC	AG	CC	CC	CT	GT	CC	AA	CG	X_X	X_X	X_X	X_X
1._EET_45_[ECU]	AA	CC	AG	_	CC	_	GT	CC	AA	CG	X_X	X_X	X_X	X_X
2._GC-04-058-4-09	AA	CC	AG	CC	CC	CT	GT	CC	AA	CG	X_X	X_X	X_X	X_X
3._GC-04-058-4-09	AA	CC	AG	CC	CC	CT	GT	CC	AA	CG	X_X	X_X	X_X	X_X
4._GC-04-057-4-08	AA	CC	AG	CC	CC	CT	GT	CC	AA	CG	X_X	X_X	X_X	X_X
5._GC-04-057-4-08	AA	CC	AG	CC	CC	CT	GT	CC	AA	CG	X_X	X_X	X_X	X_X
6._GC-04-057-4-08	AA	CC	AG	CC	CC	CT	GT	CC	AA	CG	X_X	X_X	X_X	X_X
7._GC-03-017-2-06	AA	CC	AG	CC	CC	CT	GT	CC	AA	CG	X_X	X_X	X_X	X_X
8._EET_45_[ECU]	AA	CC	AG	CC	CC	CT	GT	CC	AA	CG	X_X	X_X	X_X	X_X
9._EET_45_[ECU]	AA	CC	AG	CC	CC	CT	GT	CC	AA	CG	X_X	X_X	X_X	X_X
10._EET_45_[ECU]	AA	CC	AG	CC	CC	CT	GT	CC	AA	CG	X_X	X_X	X_X	X_X
11._EET_45_[ECU]	AA	CC	AG	CC	CC	CT	GT	CC	AA	CG	X_X	X_X	X_X	X_X
12._EET_45_[ECU]	AA	CC	AG	CC	CC	CT	GT	CC	AA	CG	X_X	X_X	X_X	X_X
13._EET_45_[ECU]	AA	CC	AG	CC	CC	CT	GT	CC	AA	CG	X_X	X_X	X_X	X_X
14._GC-04-057-4-08	AA	CC	AG	CC	CC	CT	GT	CC	AA	CG	X_X	X_X	X_X	X_X
15._GC-04-057-4-08	AA	CC	AG	CC	CC	_	GT	CC	AA	CG	X_X	X_X	X_X	X_X
16._EET_45_[ECU]	AA	CC	AG	CC	CC	_	GT	CC	AA	CG	X_X	X_X	X_X	X_X
17._EET_45_[ECU]	AA	CC	AG	CC	CC	CT	GT	CC	AA	CG	X_X	X_X	X_X	X_X
18._GC-03-017-2-06	AA	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X	X_X	X_X
19._EET_45_[ECU]	AA	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X	X_X	X_X
20._EET_45_[ECU]	AA	CC	AA	CC	AC	_	GT	AC	AT	CG	X_X	X_X	X_X	X_X
21._GC-03-017-2-06	AA	CC	AA	CC	AC	_	GT	AC	AT	CG	X_X	X_X	X_X	X_X
22._GC-04-058-4-09	AT	CT	GG	CG	AC	CT	GG	AC	AT	GG	X_X	X_X	X_X	X_X
23._EET_45_[ECU]	AT	CT	GG	CG	AC	CT	GG	AC	AT	GG	X_X	X_X	X_X	X_X

Input profile: EET_45_[ECU]

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: La Montaña Lot 6 Row 33 34_36

Dapeng Zhang, 2016

1._EET_45_[ECU]

97.2 %
36 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

2._EET_45_[ECU] GC-04-058-4-09

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

3._EET_45_[ECU] GC-04-058-4-09

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

4._EET_45_[ECU] GC-04-057-4-08

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

5._EET_45_[ECU] GC-04-057-4-08

93.4 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

6._EET_45_[ECU] GC-04-057-4-08

93.4 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

7._EET_45_[ECU] GC-03-017-2-06

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

8._EET_45_[ECU]

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3206 1 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

9._EET_45_[ECU]

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4408 1

Dapeng Zhang, 2016

10._EET_45_[ECU]

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4408 2

Dapeng Zhang, 2016

11._EET_45_[ECU]

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4408 7

Dapeng Zhang, 2016

12._EET_45_[ECU]

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4409 6

Dapeng Zhang, 2016

13._EET_45_[ECU]

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4409 8

Dapeng Zhang, 2016

14._EET_45_[ECU] GC-04-057-4-08

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

15._EET_45_[ECU] GC-04-057-4-08

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

16._EET_45_[ECU]

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4408 5

Dapeng Zhang, 2016

17._EET_45_[ECU]

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4408 8

Dapeng Zhang, 2016

18._EET_45_[ECU] GC-03-017-2-06

80.3 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

19._EET_45_[ECU]

80.3 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3206 3 > FP

Dapeng Zhang, 2016

20._EET_45_[ECU]

74.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3206 2 > FP

Dapeng Zhang, 2016

21._EET_45_[ECU] GC-03-017-2-06

74.3 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP3

22._EET_45_[ECU] GC-04-058-4-09

60.5 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

23._EET_45_[ECU]

60.5 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4409 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP372	30	TcSNP242
31	TcSNP230	32	TcSNP226	33	TcSNP193	34	TcSNP151	35	TcSNP150
36	TcSNP144	37	TcSNP32	38	TcSNP25